Differences

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--- ugli [2026/02/16 14:40] – sylvia
+++ ugli [2026/04/07 14:32] (current) – [Overlap between studies] sylvia
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 ====Updated version - v3====
 Changes in the GSA genotype and imputed data version 3 (Oct 2025)
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 . During the QC of the Affymetrix data (UGLI2+3) genetic relationships of all samples genotyped with the CytoSNP, GSA or Affymetrix array were determined and compared with the reported pedigree relations. Some DNA samples appeared not to be from the expected individual and could also not be matched to any other individual using the observed genetic relationships. These samples were therefore excluded. This resulted in a new sample size of N=36,233.
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 ===== Overlap between studies=====
-^ Study name  ^ N in UGLI1  ^ N in UGLI2 ^
+^ Study name  ^ N in UGLI1  ^ N in UGLI2+3 ^
-| DEEP (DAG1)        | ~500        |
+| DEEP (DAG1)        | ~600        | ~50 |
-| DAG3        | ~9000       |
+| GoNL (DAG2)        | 143         | |
-| GoNL        | 143         |
+| DAG3        | ~8000       | |
-| GWAS4       | 938        |
+Table 2: A number of participants in UGLI also participated in other studies, i.e. [[deep|DAG1]], [[dag2|DAG2]]/[[http://www.nlgenome.nl/|GoNL]] and [[dag3|DAG3]]. In the second and third column the sample sizes that overlap between these studies and UGLI can be found. For more on overlap between studies see [[Omics studies overlap]].
-Table 2: A number of participants in UGLI1 also participated in other studies, i.e. [[deep|DAG1]], [[dag3|DAG3]], [[dag2|DAG2]]/[[http://www.nlgenome.nl/|GoNL]] and [[gwas|GWAS4]]. In the second column the sample sizes that overlap between these studies and UGLI1 can be found. For DAG1 and DAG3 these are approximations.
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