User Tools

Site Tools


ugli

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
ugli [2023/06/29 13:10]
simone [UGLI Release 2]
ugli [2023/11/22 10:55] (current)
sylvia [UGLI Release 2]
Line 91: Line 91:
  
 ===== UGLI Release 2 ===== ===== UGLI Release 2 =====
-As of March 2023, data of an additional 28,500 genotyped participants has been made available. Samples in this release, called UGLI2, were genotyped using the FinnGen Thermo Fisher Axiom® custom array.+As of March 2023, data of an additional 28,249 genotyped participants has been made available. Samples in this release, called UGLI2, were genotyped using the FinnGen Thermo Fisher Axiom® custom array. 
 29,166 participants were selected for UGLI 2 release and assessed using the pre mentioned array. All genotypes were included for QC screening, but the QC focussed on the the autosomes and chromosomes X for which there are N=617,715 and 22,405 markers available, respectively. A final set of 28,250 samples and 462,731 markers on autosomal and X chromosomes passed the QC steps described in  29,166 participants were selected for UGLI 2 release and assessed using the pre mentioned array. All genotypes were included for QC screening, but the QC focussed on the the autosomes and chromosomes X for which there are N=617,715 and 22,405 markers available, respectively. A final set of 28,250 samples and 462,731 markers on autosomal and X chromosomes passed the QC steps described in 
  {{ :​QC_report_UGLI2_(release_1)-v1.pdf |QC_report_UGLI2_(release_1)-v1.pdf}}.  {{ :​QC_report_UGLI2_(release_1)-v1.pdf |QC_report_UGLI2_(release_1)-v1.pdf}}.
 +
 Please note that the array used for UGLI2 differs from the one used in UGLI1. Overlap in SNPs between these two arrays (GSA chip from Illumina=UGLI1 and FinnGen array from Affymetrix/​ThermoFischer=UGLI2) is small, namely 1000-10000 SNPs. Please note that the array used for UGLI2 differs from the one used in UGLI1. Overlap in SNPs between these two arrays (GSA chip from Illumina=UGLI1 and FinnGen array from Affymetrix/​ThermoFischer=UGLI2) is small, namely 1000-10000 SNPs.
- 
- 
- 
- 
- 
- 
- 
- 
- 
- 
  
  
ugli.1688037058.txt.gz · Last modified: 2023/06/29 13:10 by simone